17 groups of coevolution were detected with a total of 50 amino acids involved.
See the full text output
as well as HTML tables of pairs
of coevolving amino acids.
This Cytoscape plugin is interactive. Please allow to load, which might take a few moments.
Larger nodes correspond to greater numbers of connected (coevolving) sites [tip]
Cytoscape Web example
For interactive viewing
you can use the following Jmol plugin:
Listing of files generated (hover with mouse over file name for description):
The following input was submitted:
|Input file 1:||name: groel.aln
sequences: 12 (DNA)
alignment length: 1695
protein lengths: 547 - 553 aa
|Structure file:||PDB: 2EU1 (local copy)|
chain A: atoms 1 - 3855, residues 2 - 525, 523 matches
WARNING: 1 mismatch between reference and PDB sequence (alignment)
|tree file 2:|
|number of simulated alignments:||100|
Generated on Fri Jun 13 19:37:21 2014 (Eire), overall processing time: 15 seconds.
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